1.       Li, Q., Yu, H., and Q. Li (2026): A dual-system CRISPR-LbCpf1 platform for genome editing in the bivalves (Crassostrea gigas): targeting both embryos and oocytes. Aquaculture, 613: 743353.

2.       Hu, B.Y., Yu, H., Kong, L.F., Liu, S.K. and Q. Li (2026): Orange-shell phenotype regulated by CgABCG2-mediated Protoporphyrin IX transport in Pacific oyster (Crassostrea gigas). Aquaculture, 612:743212.

3.       Wang, C.P., Wang, S., Li, H.L., Li, D.C., Teng, W.M., Xie, X., Liu, X.F., Yu, Z.A., Sun, Y.X., Liu, Z.Y., Li, Q., and Q.Z. Wang (2025): Analysis of biochemical compositions and evaluation of nutritional value in different triploid oysters. Aquaculture Research, 11:8381213.

4.       Kang, Z.Y., Xu, C.X., Liu, H.J. and Q. Li (2026): MNNDR: multi-Input neural network improves single- and multi-trait genomic prediction of disease resistance in aquaculture. Aquaculture, 612:743079.

5.       Gong, J.W. and Q. Li (2025): Effects of low salinity stress on the taurine metabolism and transport in the Iwagaki oyster Crassostrea nippona. Comparative Biochemistry and Physiology Part D, 56:101593.

6.       Wang Y., Min, Y., Yan, T.Y., Yang, J.Q., Liu S.K. and Q. Li (2026): Integrative genomic and functional analyses identify NFKBIA as a key regulator of salinity tolerance in Corbicula mortoni. Aquaculture, 612:743221.

7.       Wang Y., Min, Y., Yang, J.Q., Yan, T.Y., Liu S.K. and Q. Li (2026): Transcriptomic and cellular responses to salinity stress in two populations of Asian clam (Corbicula fluminea) from estuarine and freshwater habitats. Aquaculture, 610:742937.

8.       Feng, J.X., Jiang, G.W., Sun, L.L., Xu, C.X. and Q. Li (2025): Comparative analysis of growth and survival among triploid oysters from Crassostrea gigas and C. angulata under varying temperature and salinity levels. Journal of Ocean University of China, 24:1747-1760.

9.       Fang, J.F and Q. Li (2025): Transcriptome analysis of strong selection due to inbreeding at the early life stage of Crassostrea gigas. Journal of Ocean University of China, 24:1351-1363.

10.    Bai, X.C., Zhou, Y.R., Bi, W.L., Hu, H., Xu, C.X. and Q. Li (2025): Transcriptome analysis of the susceptibility to high temperature of the tetraploid Pacific oyster Crassostrea gigas. Journal of Ocean University of China, 24:721-734.

11.    Hu, B.Y., Yu, H., Xu, C.X., Kong, L.F., Liu, S.K. and Q. Li (2025): Shell colour diversity in marine molluscs: from current knowledge to potential aquaculture applications. Reviews in Aquaculture, 17:e70038.

12.    Sun, L.L., Jiang, G.W., Xu, C.X. and Q. Li (2025): Survival rates and molecular responses of diploid and triploid pacific oysters Crassostrea gigas under different salinity and temperature conditions. Journal of Ocean University of China, 24:1121-1129.

13.    Bai, X.C., Liang, Y.X., Cheng, G., Wang, Z.H., Xu, C.X. and Q. Li (2025): Genetic parameters of growth and survival in the tetraploid larvae of Pacific oyster Crassostrea gigas. Journal of Ocean University of China, 24:463-470.

14.    Hu, Y.M., Xu, C.X., and Q. Li (2025) Effects of temperature and salinity on growth, survival, physiological, and immunological responses of adult Iwagaki oyster (Crassostrea nippona). Aquaculture International, 33:435.

15.    Yang, Q., Yu, H., and Q. Li (2025) Reduced Sox2 Gene Expression Leads to Impaired Gonadal Development in Female Triploid Pacific Oyster, Crassostrea gigas. Marine Biotechnology, 27:114.

16.    Zhou, J.M., Xu, C.X., and Q. Li (2025) Genetic improvement and phenotypic evaluation of tetraploid ‘Haida No. 3’ line of Pacific oysters (Crassostrea gigas) through four successive generations of mass selection.  Aquaculture International, 33:293.

17.    Jiang, K.Y., Hu, B.Y., Wang, Y., and Q. Li (2025) Multi-omics analysis of Pacific oyster “Haida No. 1” strain and wild population reveals growth-related genes and transcription regulatory network. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 56:101549.

18.    Zhou, J.M., Xu, C.X, Liu, H.J.,and Q. Li (2026) Comparative aquaculture performance of genetically improved triploid oysters of ‘Haida No. 3’ line of the Pacific oyster Crassostrea gigas. Aquaculture, 610:742905.

19.    Dou, S.L., Jiang, G.W., Yang, B., Sun, L.L. and Q. Li (2025): Genomic dissection of high-temperature resistance in hybrid oysters (Crassostrea gigas ♀ × C. angulata ♂) using SNP- and InDel-GWAS based on whole-genome resequencing. Aquaculture, 601:742310.

20.    Teng, W., Xu, C.X., Liu, S.K., Yu, H., Kong, L.F. and Q. Li (2025): DNA methylation of somatic tissues in oysters is influenced by sex and heredity. Marine Biotechnology, 27(1):31.

21.    Sun, L.L., Jiang, G.W., Xu, C.X. and Q. Li (2025): Comparative analysis of growth and metabolism in diploid and triploid Pacific oysters Crassostrea gigas under different temperature and salinity. Aquaculture International, 33(1):47.

22.    Yang, H., Chi, Y., Zhou, Y.R. and Q. Li (2025): QTL identification for growth-related traits using a high-density bin-map in Pacific oyster (Crassostrea gigas). Aquaculture, 600:742246.

23.    Liang, Y.X., Fang, J.F., Xu, C.X. and Q. Li (2025): Effects of hybridization on growth, nutrition and reproductive potentiality of the Pacific oyster: Examination of annual variation in phenotypic and biochemical composition. Aquaculture, 601:742288.

24.    Jiang, K.Y., Dou, F.J. and Q. Li (2025): Crossbreeding of three selected strains of Crassostrea gigas reveals heterosis in survival and growth. Aquaculture International, 33(2):152.

25.    Li, L., Xu, C.X. and Q. Li (2025): Estimates of genetic parameters for shell color and growth traits in the purple shell strain of Pacific oyster (Crassostrea gigas) based on microsatellite markers. Aquaculture, 599:742129.

26.    Hu, B.Y., Yu, H., Kong, L.F., Liu, S.K., Du, S.J. and Q. Li (2025): CgPPOX and CgFECH mediate protoporphyrin IX accumulation predominantly in the outer mantle fold of Pacific oyster Crassostrea gigas. Marine Biotechnology, 27(1):46.

27.    Jiang, K.Y., Yu, H., Kong, L.F., Liu, S.K., Du, S.J. and Q. Li (2025): DOPA decarboxylase (DDC) in Pacific oysters: Characterization and role in tyrosine metabolism and melanogenesis. Marine Biotechnology, 27(2):59.

28.    Li, Q., Yu, H., Du, S.J. and Q. Li (2025): Optimizing genome editing in mollusks (Crassostrea gigas) in vitro validation of sgRNA and identifying key factors influencing efficiency. The CRISPR Journal, 8:205-215.

29.    Zheng, H.L., Liang, Y.X., Cheng, G., Zhou, J.M., Bi, W.L., Hu, H. and Q. Li (2025): Optimization of microsatellite multiplex PCRs for triploidy verification and genetic diversity assessment in the Pacific oyster, Crassostrea gigas. Marine Biotechnology, 27(2):55.

30.    Jiang, G.W., Xu, C.X. and Q. Li (2025): General and specific combining abilities of Pacific oyster (Crassostrea gigas) and Fujian oyster (C. angulata) for growth, survival and thermal tolerance of their reciprocal hybrids. Journal of Ocean University of China, 24(1):238-248.

31.    Li, X.X., Xu, C.X. and Q. Li (2025): Comparative histological analysis of gonad development between autotriploid (Crassostrea gigas and C. angulata) and allotriploid oysters. Aquaculture, 594:741456.

32.    Jiang, K.Y., Yu, H., Kong, L.F., Liu, S.K., Du, S.J. and Q. Li (2025): Examination of the roles of CgTH in tyrosine metabolism and pigmentation of Pacific oyster (Crassostrea gigas). Aquaculture, 595:741500.

33.    Yang, Q., Yu, H., Du, S.J. and Q. Li (2025): Overexpression of CDC42 causes accumulation of DNA damage leading to failure of oogenesis in triploid Pacific oyster Crassostrea gigas. International Journal of Biological Macromolecules, 282:136769.

34.    Xu, T., Kong, L.F. and Q. Li (2025): Sex-Specific ORFs in Marine Clams (Bivalvia: Veneridae) with Doubly Uniparental Inheritance: Exploring Their Origin and Putative Function.Marine Biotechnology, 27(6):156.

35.    Shen Y.W., Wang, Y.L. and Kong, L.F (2025): Chromosome-level genome assembly of the clam, Xishi tongue Coelomactra antiquata.Scientific Data, 12(1): 422.

36.    Gong, J.H., Hang, X., Qi, L., Kong, L.F. and Q. Li (2025): Incorporation of microgastropoda species provides novel insights into phylogeny of Trochoidea (Gastropoda: Vetigastropoda). Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 54: 101420.

37.    Tang, W.K., Xu, T., Gong, J.H. and Kong, L.F. (2025): Denser Mitogenomic Sampling for Exploring the Phylogeny of Tellinoidea (Mollusca: Bivalvia).Diversity,17(5): 303

38.    Shi, C.Y., Yang, Y., Tan, Y., Li, Q. and Liu, S.K. (2025): Chromosome-level haplotype-resolved genome assembly of the giant honeycomb oyster, Hyotissa hyotis. Scientific Data, 12, 1327

39.    . Ren, L.T., Yang, B., Xu, M.Y., Zhi, C.J., Li, Q. and Liu, S.K. (2025): 5-hydroxytryptamine mediated 5-HTR4-ILP axis orchestrates glucose utilization and glycogen storage in the Pacific oyster, Crassostrea gigas. Food Bioscience,71: 107079.

40.    Xu, M.M., Yang, B., Han, X.J., Sun, D.Q., Guo, C., Zhi, C.J., Li, Q. and Liu, S.K. (2025): Estimation of genetic parameters for hypoxia tolerance in the Pacific oyster, Crassostrea gigas. Journal of Ocean University of China, 24: 1421–1427.

41.    Han, X.J., Yang, B., Guo, C., Xu, M.M., Sun, D.Q., Zhi, C.J., Li, Q. and Liu, S.K. (2025): Genetic basis of low-salinity tolerance in the Pacific oyster (Crassostrea gigas) as revealed by estimation of genetic parameters and genome-wide association study. Marine Biotechnology,27:3.

42.     Tan, Y., Shi, C., Li, Q., Xu, H. and Liu, S.K. (2025): Regulatory variants of glycogen synthase contribute to differential glycogen content between Crassostrea gigas and C. sikamea. Comparative Biochemistry and Physiology Part B：Biochemistry and Molecular Biology, 279:111101.

43.    Liu, S.K., Shi, C., Chen, C., Tan, Y., Tian, Y. and Macqueen, D.J. (2025): Haplotype-resolved genomes provide insights into the origins and functional significance of genome diversity in bivalves. Cell Reports, 44(5).

44.    Ke, Y., Shi, C., Li, Y., Li, Q. and Liu, S.K. (2025): Comparative mantle transcriptomics reveal molecular basis of shell phenotype in the oyster. Aquaculture(Pt.2), 596.

45.    Zhang, Z., Yang, B., Ren, L.T., Li, Q. and Liu, S.K. (2025): Snp fingerprinting for germplasm identification of the fast-growing pacific oyster (Crassostrea gigas) haida no. 1 variety. Marine Biotechnology, 27(1):7.

46.    Wan, K., Shi, C., Li, Y., Ren, L.T., Fu, H., Li, Q. and Liu, S.K. (2025): Profiling of chromatin accessibility and regulatory elements toward understanding the mechanisms underlying growth regulation in the pacific oyster (Crassostrea gigas). Aquaculture, 595:741531.

47.    Mokrani, A., Jian‐an Li, Li, Q. and Liu, S.K. (2025): Toward understanding mechanistic regulation of body size and growth control in bivalve mollusks. Reviews in Aquaculture, 17：e12962.

48.    Zhao, X., Zhou, Y., Yu, H. and Li, Q. (2026): Comprehensive identification and expression profiling of pirna pathway genes in the pacific oyster Crassostrea gigas. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 58(c), 101739.

49.    Yang, Q., Yu, H. and Li, Q. (2025): Reduced sox2 gene expression leads to impaired gonadal development in female triploid pacific oyster, Crassostrea gigas. Marine Biotechnology, 27:114.

50.    Zheng, C., Yu, H. and Li, Q. (2025): Genomic identification and functional characterization of the actin gene family in relation to gonadal development and gametogenesis in the pacific oyster (Crassostrea gigas). Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 56: 101588

51.    Guo, L., Wang, H., Yu, H. and Li, Q. (2025): Integrated transcriptomic analysis reveals potential cerna network and hub genes involved in sex determination and differentiation of the pacific oyster (Crassostrea gigas). International Journal of Biological Macromolecules, 311:143551.

52.    Zhang, K., Yu, H. and Li, Q. (2025): Comprehensive identification and characterization of ribosomal protein genes in the pacific oyster (Crassostrea gigas): potential roles in reproduction and development. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 304: 111844.

53.    Wang, H., Lin, X., Zheng, C., Yu, H. and Li, Q. (2025): Metabolic reprogramming and mitochondrial dysfunction underlie β gonia arrest and niche cell dysfunction in sterile triploid oysters. Communications Biology, 8:1802.

54.    Zheng, J., Wang, X., Huangfu, Y. and Zheng, X. (2026): The effects of freshwater immersion on muscle qualities and the evaluation of water addition in amphioctopus fangsiao (mollusca: cephalopoda) from the seafood market. Food Chemistry, 502, 147666.

55.    Wang, X., Zheng, J., Li, J., Xiao, S. and Zheng, X. (2026): Potential impacts of climate change and fishing pressure on important cephalopods in northwest pacific: applications for conservation and management of vulnerable habitats. Journal of Environmental Management, 397, 128242.

56.    Wang, X., Lyu, Y., Zhang, C. and Zheng, X. (2025): Population genetic structure and phylogenetic relationships reveal cryptic biodiversity in the uroteuthis(photololigo)duvaucelii (cephalopoda: loliginidae) species complex. Hydrobiologia, 852, 2957-2970.

57.    58. Kongmeephol, P., Zheng, X. and Sukhsangchan, C. (2025): Morphological variation and genetic connectivity of needle cuttlefish (sepia aculeata van hasselt, 1835) populations in thai-malay peninsula waters: implications for fishery management. Marine Biology, 172:50.

58.    王丽华,郑小东, 2025. 短蛸脑图谱的构建. 水产学报, 49(02): 154-162.

59.    杜利杰，徐成勋，李琪，2025：长牡蛎壳橙快速生长品系生长存活比较及遗传参数评估. 水产学报，49(1):019610.